:: DESCRIPTION
NGSoptwin is an R package to estimate the optimal window size in the analysis of very low coverage next-generation sequence data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Mar 23.
Estimating optimal window size for analysis of low-coverage next-generation sequence data.
Gusnanto A1, Taylor CC, Nafisah I, Wood HM, Rabbitts P, Berri S.
:: DESCRIPTION
ArchTEx (Architectural Tag Extender) identifies the optimal extension of sequence tags based on the maximum correlation between forward and reverse tags and extracts and visualizes sites of interest using the predicted extension.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2012 Apr 1;28(7):1021-3. doi: 10.1093/bioinformatics/bts063. Epub 2012 Feb 2.
ArchTEx: accurate extraction and visualization of next-generation sequence data.
Lai WK1, Bard JE, Buck MJ.
:: DESCRIPTION
Shimmer is a software package for the characterization of genetic differences between two very similar samples, e.g., a tumor sample and its matched normal tissue sample.
::DEVELOPER
NHGRI (the National Human Genome Research Institute)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2013 Jun 15;29(12):1498-503. doi: 10.1093/bioinformatics/btt183. Epub 2013 Apr 24.
Shimmer: detection of genetic alterations in tumors using next-generation sequence data.
Hansen NF, Gartner JJ, Mei L, Samuels Y, Mullikin JC.
