TranscriptSimulator 0.7 – Simulate Transcriptome Next-gen Reads, including 454 and Illumina

TranscriptSimulator 0.7

:: DESCRIPTION

TranscriptSimulator: Simple text-based, next-gen output simulator. Specifically designed to simulate transcriptome next-gen reads, including 454 and Illumina. Uses a model to simulate transcription followed by simulated sequencing using various customizable parameters. Uses a nucleotide gene set as a template (e.g. in silico predicted gene set). Version 0.70 has simulated SNPs/Indels with an improved model.

::DEVELOPER

J. Cris Vera

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 TranscriptSimulator

:: MORE INFORMATION

Otupipe 1.1.9 – OTU Clustering pipeline for Next-gen reads

Otupipe 1.1.9

:: DESCRIPTION

The otupipe script creates OTUs from next-generation sequence reads for single-region experiments such as 16S and ITS. Otupipe performs error-correction, amplicon and abundance estimation, chimera detection (using UCHIME) and OTU clustering.

::DEVELOPER

Robert Edgar

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 otupipe

:: MORE INFORMATION