ncRNAClassifier 1.2 – Identify TE and TE-derived ncRNAs from other ncRNAs

ncRNAClassifier 1.2

:: DESCRIPTION

ncRNAClassifier is a tool enabling the identification of repetitive elements in precursor ncRNA sequences.

::DEVELOPER

EVRY RNA – IBISC

:: SCREENSHOTS

ncRNAClassifier

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 ncRNAClassifier

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Sep 25;13:246. doi: 10.1186/1471-2105-13-246.
ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.
Tempel S1, Pollet N, Tahi F.

Rsite2 – Predict the Functional Sites of ncRNAs

Rsite2

:: DESCRIPTION

Rsite2 is a secondary structure based computational method to predict the functional sites of noncoding RNAs (ncRNAs), which represent a big class of RNA molecules that show critical regulatory functions in a variety of biological processes.

::DEVELOPER

the Cui Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Windows/Linux
  • Python

:: DOWNLOAD

Rsite2

:: MORE INFORMATION

Citation

Zeng P, Cui Q.
Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs.
Sci Rep. 2016 Jan 11;6:19016. doi: 10.1038/srep19016. PMID: 26751501; PMCID: PMC4707467.

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