DeepMP
:: DESCRIPTION
DeepMP is a convolutional neural network (CNN)-based model that takes information from Nanopore signals and basecalling errors to detect whether a read is methylated or not.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bonet J, Chen M, Dabad M, Heath S, Gonzalez-Perez A, Lopez-Bigas N, Lagergren J.
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.
Bioinformatics. 2021 Oct 28:btab745. doi: 10.1093/bioinformatics/btab745. Epub ahead of print. PMID: 34718417.