Tag: Multiple

Knorm 1.0 – Microarray Data From Multiple Biologically Interrelated Experiments

Knorm 1.0

:: DESCRIPTION

Knorm provides Knorm correlations between genes (or probes) from microarray data obtained across multiple biologically interrelated experiments. The Knorm correlation adjusts for experiment dependencies (correlations) and reduces to the Pearson coefficient when experiment dependencies are absent. The Knorm estimation approach can be generally applicable to obtain between-row correlations from data matrices with two-way dependencies.

::DEVELOPER

Siew Leng Teng <slteng at stat.berkeley.edu>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Knorm

:: MORE INFORMATION

Friend 2.0 – Multiple Structure Visualization & Multiple Sequence Alignment

Friend 2.0

:: DESCRIPTION

Friend (Integrated FRont-END) is a bioinformatics application designed for simultaneous analysis and visualization of multiple structures and sequences of proteins and/or DNA/RNA. The application provides basic functionalities such as: structure visualization with different rendering and coloring, sequence alignment, and simple phylogeny analysis, along with a number of extended features to perform more complex analyses of sequence structure relationships, including: structure alignment of proteins, investigation of specific interaction motifs, studies of protein-protein and protein-DNA interactions, and protein super-families.

::DEVELOPER

ilyin lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

Friend

:: MORE INFORMATION

Citation:

Friend, an integrated analytical front-end application for bioinformatics. Bioinformatics. 2005 Sep 15(18):3677-8.