Tag: Multiple Aligner

ProDA 1.0 – Protein Multiple Aligner

ProDA 1.0

:: DESCRIPTION

ProDA (Protein Domain Aligner) is a protein multiple aligner that automatically finds domain structures of sequences with shuffled and repeated domain architectures.

::DEVELOPER

Serafim’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  ProDA

:: MORE INFORMATION

Citation

Phuong T.M., Do C.B., Edgar R.C., and Batzoglou S.
Multiple alignment of protein sequences with repeats and rearrangements.
Nucleic Acids Research 2006 34(20), 5932-5942

Magma 1.0 – Multiple Aligner of Genomic Multiple Alignments

Magma 1.0

:: DESCRIPTION

Magma is a fast, sensitive tool for whole regulome motif-finding in eukaryotic genomes

::DEVELOPER

Stormo Lab in Department of Genetics, Washington University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler
  • Perl

:: DOWNLOAD

 Magma

:: MORE INFORMATION

Citation

J Comput Biol. 2012 Feb;19(2):139-47. doi: 10.1089/cmb.2011.0249.
Fast, sensitive discovery of conserved genome-wide motifs.
Ihuegbu NE, Stormo GD, Buhler J.