Strainer 0.9.7 – Multi-platform Visualization tool for Metagenomics Data

Strainer 0.9.7

:: DESCRIPTION

Strainer is a multi-platform visualization tool for metagenomics data. It allows the user to easily browse the variation present in shotgun sequence data from non-clonal samples.

::DEVELOPER

Banfield Lab

:: SCREENSHOTS

:: REQUIREMENTS

Linux/windows with cygwin/MacOsX
Java

:: DOWNLOAD

Strainer

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2007 Oct 17;8:398.
Strainer: software for analysis of population variation in community genomic datasets.
Eppley JM, Tyson GW, Getz WM, Banfield JF.

MPCBS 1.1.1 – Multi-platform segmentation for DNA copy number data

MPCBS 1.1.1

:: DESCRIPTION

MPCBS (Multi-Platform Circular Binary Segmentation) is a software which pools statistical evidence across platforms during segmentation, and does not require pre-standardization of different data sources. It involves a weighted sum of t-statistics, which arises naturally from the generalized log-likelihood ratio of a multi-platform model.

::DEVELOPER

Nancy R. Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX / Windows
R Package

:: DOWNLOAD

MPCBS

:: MORE INFORMATION

Citation

Zhang, NR, Senbabaoglu, Y and Li, J, 2010,
Joint Estimation of DNA Copy Number from Multiple Platforms.
Bioinformatics, 26, 153-160.