mrsFAST-Ultra 3.3.8

:: DESCRIPTION

mrsFAST (Micro-read Substitution-only Fast Alignment Search Tool ) is a cache oblivious mapper that is designed to map short reads to reference genome. mrsFAST maps short reads with respect to user defined error threshold. In this manual, we will show how to choose the parameters and tune mrsFAST with respect to the library settings. mrsFAST is designed to find ‘all’ the mappings for a given set of reads

::DEVELOPER

Eichler Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• C Complier

:: DOWNLOAD

 mrsFAST-Ultra

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 May 8.
mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.
Hach F1, Sarrafi I, Hormozdiari F, Alkan C, Eichler EE, Sahinalp SC.

Hach F, Hormozdiari F, Alkan C, Hormozdiari F, Birol I, Eichler EE, Sahinalp SC. (2010).
mrsFAST: a cache-oblivious algorithm for short-read mapping.
Nat Methods Aug;7(8):576-7.