POLYVIEW-2D / POLYVIEW-3D / POLYVIEW-MM – Protein Structure Annotation using Sequence Profiles / Structures / Motions

POLYVIEW-2D / POLYVIEW-3D / POLYVIEW-MM

:: DESCRIPTION

The POLYVIEW-2D protein structure visualization server can be used to generate amino acid sequence annotations, such as secondary structure, relative solvent accessibility, evolutionary conservation, and physico-chemical property profiles. It can also be used to identify residues involved in protein-protein interactions and highlight other important sites and motifs.

POLYVIEW-3D is a web-based tool for macromolecular structure visualization and analysis. In particular, it provides a wide array of options for automated structural and functional analysis of proteins and their complexes. This tutorial aims to describe and illustrate the available rendering options and annotation capabilities of POLYVIEW-3D.

POLYVIEW-MM (Molecular Motion) enables animation of trajectories generated by Molecular Dynamics and related simulation techniques, as well as visualization of alternative conformers, e.g., obtained as a result of protein structure prediction methods or small molecule docking, using an intuitive web-based interface.

:: SCREENSHOTS

N/A

::DEVELOPER

Meller Lab

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins.
Porollo AA, Adamczak R, Meller J.
Bioinformatics. 2004 Oct 12;20(15):2460-2. Epub 2004 Apr 8.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W662-6. doi: 10.1093/nar/gkq445. Epub 2010 May 26.
POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations.
Porollo A, Meller J.

ImageTracker 3.00 – Analysis and Measurement of Motion in Video

ImageTracker 3.00

:: DESCRIPTION

ImageTracker is an application for the analysis and measurement of motion in video. It was designed specifically for digital video microscopy analysis.

::DEVELOPER

CISMM (Computer Integrated Systems for Microscopy and Manipulation)

:: SCREENSHOTS

ImageTracker

:: REQUIREMENTS

:: DOWNLOAD

 ImageTracker

:: MORE INFORMATION

Video Spot Tracker 8.11 – Track Motion of one or more Spots in Video

Video Spot Tracker 8.11

:: DESCRIPTION

The Video Spot Tracker program is used to track the motion of one or more spots in a set of image files, a video file, from a Microsoft DirectShow-compatible camera, or from some scientific cameras.

::DEVELOPER

CISMM (Computer Integrated Systems for Microscopy and Manipulation)

:: SCREENSHOTS

VideoSpot

:: REQUIREMENTS

  • Windows/ MacOsX

:: DOWNLOAD

 Video Spot Tracker

:: MORE INFORMATION