MotifScan 1.3.0

:: DESCRIPTION

Given a set of input genomic regions, MotifScan scans the sequences to detect the occurrences of known motifs. It can also applies a statistical test on each motif to check whether the motif is significantly over- or under-represented (enriched or depleted) in the input genomic regions compared to another set of control regions.

::DEVELOPER

ShaoLab at CAS-MPG Partner Institute for Computational Biology, SIBS, CAS.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• Python

:: DOWNLOAD

 MotifScan

:: MORE INFORMATION

Citation

Sun, H., Wang, J., Gong, Z. et al.
Quantitative integration of epigenomic variation and transcription factor binding using MAmotif toolkit identifies an important role of IRF2 as transcription activator at gene promoters.
Cell Discov 4, 38 (2018).