Mosaic 1.05 – a visual framework for Sequence Analysis using N-grams and Spectral rearrangement

Mosaic 1.05

:: DESCRIPTION

Mosaic is a software application to visually analyze sequence relationships. The similarities between the sequences of a given set are displayed within a matrix (mosaic plot), which enables the visual identification of clusters of related sequences, outliers or other sequences with special properties.

::DEVELOPER

Mosaic team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Python
matplotlib

:: DOWNLOAD

Mosaic

:: MORE INFORMATION

Citation

Stefan R. Maetschke, Karin S. Kassahn, Jasmyn A. Dunn, Siew P. Han, Eva Z. Curley, Katryn J. Stacey, Mark A. Ragan
A visual framework for sequence analysis using n-grams and spectral rearrangement
Bioinformatics. 2010 Mar 15;26(6):737-44. doi: 10.1093/bioinformatics/btq042

MOSAIC 2016 – ImageJ plugin for Biological Fluorescence Microscopy

MOSAIC 2016

:: DESCRIPTION

MOSAIC (MOdels, Simulations, and Algorithms for Interdisciplinary Computing) , the image-processing algorithms developed at the MOSAIC Group for fluorescence microscopy , are available as plugins for the popular free image processing software ImageJ.

::DEVELOPER

MOSAIC group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux / Mac OsX
Java
ImageJ

:: DOWNLOAD

MOSAIC

:: MORE INFORMATION

Citation:

I. F. Sbalzarini and P. Koumoutsakos.
Feature Point Tracking and Trajectory Analysis for Video Imaging in Cell Biology,
Journal of Structural Biology 151(2):182-195, 2005.

MOSAIC 1.1 – GO network Annotation and Partition in Cytoscape

MOSAIC 1.1

:: DESCRIPTION

Mosaic performs network annotation and interactive partitioning driven by the Gene Ontology. The Mosaic algorithm works by first annotating the network with GO terms, followed by partitioning the network into a series of subnetworks based on the biological process annotation of nodes.

::DEVELOPER

the National Resource for Network Biology (NRNB)

:: SCREENSHOTS

:: REQUIREMENTS

Linux / MacOsX /Windows
Java
Cytoscape

:: DOWNLOAD

MOSAIC

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Jul 15;28(14):1943-4. doi: 10.1093/bioinformatics/bts278. Epub 2012 May 9.
Mosaic: making biological sense of complex networks.
Zhang C1, Hanspers K, Kuchinsky A, Salomonis N, Xu D, Pico AR.

mosaic 0.1-1 – Hybrid Zones Analysis

mosaic 0.1-1

:: DESCRIPTION

Mosaic is a software which calculates the ‘mosaicity’ of a one dimensional hybrid zone. This package uses likelihood to fit step-wise models to one dimensional hybrid zone data, and to estimate the ‘mosaicity’ of the hybrid zone.

::DEVELOPER

Rich FitzJohn , Leithen M’Gonigle

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/MacOsX
R package

:: DOWNLOAD

Mosaic

:: MORE INFORMATION

Citation

Evolution. 2010 Feb 1;64(2):444-55. doi: 10.1111/j.1558-5646.2009.00838.x. Epub 2009 Sep 23.
Assortative mating and spatial structure in hybrid zones.
M’Gonigle LK, FitzJohn RG.