Morpheus 2.0 – Prediction of Transcription Factors Binding Sites based on Position Weight Matrix

Morpheus 2.0

:: DESCRIPTION

Morpheus offers a range of tools to analyze transcription factor binding sites (TFBS) on DNA sequences.

::DEVELOPER

BIODEV

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Python

:: DOWNLOAD

 Morpheus

:: MORE INFORMATION

MORPHEUS – Identify Residues in Predicted Models with a large Error

MORPHEUS

:: DESCRIPTION

MORPHEUS is a tool to identify and rebuild residues in predicted models with a large error. The error in predicted models is estimated using the average pairwise geometric distance per residue computed among selected lowest energy models. This error distribution among residues is employed to guide the rebuilding process that focuses on more error-prone residues of the coarse-grain models.

::DEVELOPER

Structural Bioinformatics Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 MORPHEUS

:: MORE INFORMATION

Citation

Acta Crystallogr D Biol Crystallogr. 2012 Nov;68(Pt 11):1522-34. doi: 10.1107/S0907444912037961. Epub 2012 Oct 18.
Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing.
Shrestha R1, Simoncini D, Zhang KY.

Morpheus 2.0 RC2 – Modeling Environment for Multiscale and Multicellular Systems Biology

Morpheus 2.0 RC2

:: DESCRIPTION

Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualization, archiving and batch processing.

::DEVELOPER

IMC group

:: SCREENSHOTS

Morpheus

:: REQUIREMENTS

  • Linux / Windows / MacOsX

:: DOWNLOAD

 Morpheus 

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 1;30(9):1331-2. doi: 10.1093/bioinformatics/btt772. Epub 2014 Jan 17.
Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology.
Starruß J1, de Back W, Brusch L, Deutsch A.