KOSMOS 3.0 – Morph server for Nucleic Acids, Proteins and their Complexes

KOSMOS 3.0

:: DESCRIPTION

KOSMOS is the first web server to provide the structural biology community with both harmonic and anharmonic analyses of macromolecular structures including DNA, RNA, and Proteins.

::DEVELOPER

Material Strength & Computational Bioengineering Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

KOSMOS

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W531-6. doi: 10.1093/nar/gks525. Epub 2012 Jun 4.
KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.
Seo S1, Kim MK.

MORPH v0.1 beta – Probabilistic Alignment of Cis-regulatory Modules

MORPH v0.1 beta

:: DESCRIPTION

MORPH: Probabilistic alignment combined with hidden Markov models of cis-regulatory modules

::DEVELOPER

The Sinha Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

MORPH

:: MORE INFORMATION

Citation:

MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.
Sinha S, He X.
PLoS Comput Biol. 2007 Nov;3(11):e216.

MORPH / MORPH-R 10.7 – MOdule guided Ranking of Candidate PatHway Genes

MORPH / MORPH-R 10.7

:: DESCRIPTION

MORPH is an algorithm for revealing missing genes in biological pathways, and demonstrate its capabilities

MORPH-R is Morph R package.

::DEVELOPER

Ron Shamir’s lab and Eleanore Wurtzel’s lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
R

:: DOWNLOAD

MORPH , MORPH-R

:: MORE INFORMATION

Citation

Tzfadia, O., Amar, D., Bradbury, L.M.T., Wurtzel, E.T., and Shamir, R. (2012)
The MORPH algorithm: ranking candidate genes for membership in Arabidopsis thaliana and Solanum lycopersicum pathways.
Plant Cell. 2012 Nov;24(11):4389-406. doi: 10.1105/tpc.112.104513.

Physiol Plant. 2015 Jan 27. doi: 10.1111/ppl.12326. [Epub ahead of print]
The MORPH-R web server and software tool for predicting missing genes in biological pathways.
Amar D, Frades I, Diels T, Zaltzman D, Ghatan N, Hedley PE, Alexandersson E, Tzfadia O, Shamir R.

MORPH – Predict Protein Interaction Partners between members of two Protein Families

MORPH

:: DESCRIPTION

MORPH predicts protein interaction partners between members of two protein families that are known to interact (for example: Ligands and Receptors).

::DEVELOPER

Raja Jothi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
perl

:: DOWNLOAD

MORPH

:: MORE INFORMATION

Citation

Raja Jothi, Maricel Kann,and Teresa M. Przytycka
Predicting Protein-Protein Interaction by Searching Evolutioinary Tree Automorphism Space.
Bioinformatics. 2005 June; 21(Suppl 1): i241–i250.