DomainGraph 3.01 – Cytoscape Plugin of Analysis and Visualization of Molecular Interaction Networks

DomainGraph 3.01

:: DESCRIPTION

DomainGraph is the successor tool of DomainNetworkBuilder and works as Java plugin for Cytoscape, a free open-source software platform for visualization and analysis of biomolecular networks. This plugin decomposes protein networks into domain-domain interactions and generates a new network of interacting domains. It also allows the integration of exon expression data measured using Affymetrix GeneChip microarrays, which supports the analysis of alternative splicing events and the characterization of their effects on protein and domain interaction networks.

::DEVELOPER

Max-Planck-Institut Informatik

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

  DomainGraph

:: MORE INFORMATION

Citation:

Emig, D., Salomonis, N., Baumbach, J., Lengauer, T., Conklin, BR., Albrecht, M. (2010)
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.
Nucleic Acids Res. 2010 July 1; 38

Wormpath 1.0.4 – Searching for Molecular Interaction Networks in Caenorhabditis Elegans

Wormpath 1.0.4

:: DESCRIPTION

Wormpath is a tool to investigate molecular networks in the nematode Caenorhabditis elegans using information on genetic interactions provided by the Wormbase.

::DEVELOPER

the CECAD Research Center at the University of Cologne, Germany.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Wormpath: searching for molecular interaction networks in Caenorhabditis elegans.
Frommolt P, Schumacher B.
Source Code Biol Med. 2015 Apr 2;10:5. doi: 10.1186/s13029-015-0034-6.

BiLayout 1.0 – Cytoscape plugin for Analysis & Visualization of Molecular Interaction Networks

BiLayout 1.0

:: DESCRIPTION

BiLayout is a Java plugin for Cytoscape, a software platform for the analysis and visualization of molecular interaction networks. This plugin computes a bipartite network layout for 2 user-selected groups of nodes.

::DEVELOPER

Max-Planck-Institut Informatik

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 BiLayout

:: MORE INFORMATION

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