Tag: Modeling Tool

XmMol 3.1 – Macromolecular Visualization and Modeling tool

XmMol 3.1

:: DESCRIPTION

XmMol is a desktop macromolecular visualization and modeling tool designed to be easy to use, configure and enhance. Its graphics are based on X11, and part of its user interface is based on Motif. Thus it provides a way of displaying structures on any X11 server.

::DEVELOPER

XmMol team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / SUN Solaris/ Dec Alpha

:: DOWNLOAD

 XmMol

:: MORE INFORMATION

Citation

J Mol Graph. 1995 Feb;13(1):67-72, 62.
XmMol: an X11 and motif program for macromolecular visualization and modeling.
Tufféry P.

MMTSB toolset – Multiscale Modeling Tools for Structural Biology

MMTSB toolset

:: DESCRIPTION

MMTSB toolset (Multiscale Modeling Tools for Structural Biology) can be used for replica exchange calculations with sander. This package also facilitates other Amber tasks, such as dealing in a consistent way with an ensemble of conformations, massaging PDB files, and carrying out some common types of structural analysis.

::DEVELOPER

NIH Research Resource Center for the Development of Multiscale Modeling Tools for Structural Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Perl

:: DOWNLOAD

MMTSB toolset

:: MORE INFORMATION

Citation:

M Feig, J Karanicolas and CL Brooks, III
MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology
Journal of Molecular Graphics and Modeling, 2004, 22 (5), 377-95.

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