Morpheus 2.0 RC2 – Modeling Environment for Multiscale and Multicellular Systems Biology

Morpheus 2.0 RC2

:: DESCRIPTION

Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualization, archiving and batch processing.

::DEVELOPER

IMC group

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX

:: DOWNLOAD

Morpheus

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 1;30(9):1331-2. doi: 10.1093/bioinformatics/btt772. Epub 2014 Jan 17.
Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology.
Starruß J1, de Back W, Brusch L, Deutsch A.

Data2Dynamics 170117 – Modeling Environment Tailored to Parameter Estimation in Dynamical System

Data2Dynamics 170117

:: DESCRIPTION

The Data2Dynamics software package is a collection of numerical methods for quantitative dynamic modeling and a comprehensive model and data description language. The software facilitates the construction of dynamical models for biochemical reaction networks, but is not limited to this.

::DEVELOPER

D2D development team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux / MacOsX
MatLab

:: DOWNLOAD

Data2Dynamics

:: MORE INFORMATION

Citation:

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems.
Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, Vanlier J, T?nsing C, Adlung L, Engesser R, Mader W, Heinemann T, Hasenauer J, Schilling M, H?fer T, Klipp E, Theis F, Klingmüller U, Sch?berl B, Timmer J.
Bioinformatics. 2015 Jul 3. pii: btv405.