Statio – Test Stationarity of Base Composition and Models

Statio

:: DESCRIPTION

Statio is a software for testing stationarity of nucleotide and amino acid composition in a set of sequences

::DEVELOPER

Advisory Board

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

  Statio

:: MORE INFORMATION

Citation:

Mol Biol Evol. 1995 Jan;12(1):131-51.
Tests of applicability of several substitution models for DNA sequence data.
Rzhetsky A, Nei M.

MUMMALS 1.01 – MUltiple alignment with Multiple MAtch state models of Local Structure

MUMMALS 1.01

:: DESCRIPTION

MUMMALS constructs a multiple sequence alignment given a set of protein sequences.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 MUMMALS

:: MORE INFORMATION

Citation:

J. Pei and N.V.Grishin (2006)
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information“.
Nucleic Acids Res 34(16): 4364-4374

EMOGEE 20070704 – Estimator for MOdels of Gene Expression Evolution

EMOGEE 20070704

:: DESCRIPTION

EMOGEE (Estimator for MOdels of Gene Expression Evolution) implements neutral models for evolution of gene expression to analyze or simulate microarray data.

::DEVELOPER

 the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 EMOGEE

:: MORE INFORMATION

Citation:

M. Rosskopf (2007)
Development and Applications of Neutral Models for Evolution of Gene Expression,
Inaugural-Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Heinrich-Heine-Universität Düsseldorf

Payao Uploader 1.0 – CellDesigner Plugin to Upload Model to Payao

Payao Uploader 1.0

:: DESCRIPTION

Payao Uploader is to allow the user to upload CellDesigner pathway models to Payao system – a web-based community curation platform

::DEVELOPER

Systems Biology Institute

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Payao Uploader ; Manual

:: MORE INFORMATION

Compatibility: Built for CellDesigner 4.1.