Tag: miRNA-mRNA interaction

ProMISe 1.24.0 – Infer miRNA-mRNA interactions using paired expression data from a single sample

ProMISe 1.24.0

:: DESCRIPTION

ProMISe is a novel approach to infer Probabilistic MiRNA-mRNA Interaction Signature from a single pair of miRNA-mRNA expression profile. Our model considers mRNA and miRNA competition as a probabilistic function of the expressed seeds (matches).

::DEVELOPER

Yue Li @ The Zhang Lab, University of Toronto

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Weindows/Linux/MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

 ProMISe

:: MORE INFORMATION

Citation

Li, Y., Liang, C., Wong, KC, Jin, K., and Zhang, Z. (Feb, 2014)
Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach. Nucleic Acids Research
Nucl. Acids Res. (2014) doi: 10.1093/nar/gku182

TaLasso – Quantification of miRNA-mRNA interactions

TaLasso

:: DESCRIPTION

The TaLasso (miRNA-Target LASSO) web site is an easy tool where only few steps are needed to get the interaction scoring results provided by TaLasso algorithm

::DEVELOPER

TaLasso team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Windows/Linux/MacOsX
  • Matlab / R Package

:: DOWNLOAD

 TaLasso

:: MORE INFORMATION

Citation

PLoS One. 2012;7(2):e30766. Epub 2012 Feb 14.
Quantification of miRNA-mRNA interactions.
Muniategui A, Nogales-Cadenas R, Vázquez M, Aranguren XL, Agirre X, Luttun A, Prosper F, Pascual-Montano A, Rubio A.