miRNA-MATE – A mapping pipeline for SOLiD miRNA data

miRNA-MATE

:: DESCRIPTION

miRNA-MATE is a package designed specifically for mapping and summarizing miRNA (and isomiR) data from SOLiD sequencing data sets. MicroRNAs can be particularly challenging to map because of the limited information content in a 22nt molecule.

::DEVELOPER

Expression Genomics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • Java

:: DOWNLOAD

 miRNA-MATE

:: MORE INFORMATION

Citation

Nicole Cloonan,et al.
MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Genome Biology 2011, 12:R126