OMERO is client-server Java software for visualisation, management and analysis of biological microscope images. The software consists of the OMERO server which can be accessed by a number of different clients. The OMERO clients allow the scientist to remotely manage, view, annotate and measure multi-dimensional images from anywhere. OMERO can also be extended to support data analysis.
Metadata management for high content screening in OMERO.
Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR.
Methods. 2015 Oct 22. pii: S1046-2023(15)30125-0. doi: 10.1016/j.ymeth.2015.10.006.
Image SXM is a version of the public domain image analysis software NIH Image that has been extended to handle the loading, display and analysis of scanning microscope images. Image SXM supports SAM, SCM, SEM, SFM, SLM, SNOM, SPM and STM images.
top2maya is a script written in MEL (Maya Embedded Language) which runs in Alias|Wavefront’s Maya 2.5 and higher. It is a 3D visualization tool which analyzes images in 256 shades of gray and then displaces the individual pixels based on their color. It is a very effective tool for viewing 2D atomic force microscope images as 3D objects. As well as giving you a 3D image, it can also allow you to visualize multiple variables by doing the 3D displacement with one variable, for example the topography, then doing the shading on the new 3D object with another variable, for example surface friction.