PITA 6 – microRNA prediction tool

PITA 6

:: DESCRIPTION

PITA allows you to run the PITA algorithm on your choice of UTRs and microRNAs. PITA starts by scanning the UTR for potential microRNA targets (using the supplied seed matching tools) and then scores each site

::DEVELOPER

Segal Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX /  Linux
  • Perl

:: DOWNLOAD

 PITA

:: MORE INFORMATION

Citation

Kertesz et al.,
The role of site accessibility in microRNA target recognition,
Nature Genetics 39, 1278 – 1284 (2007)

MicroTar 0.9.6 – microRNA Target Prediction from RNA Duplexes

MicroTar 0.9.6

:: DESCRIPTION

MicroTar is a microRNA target prediction program based on mRNA sequence complementarity (3′-UTR seed matches) and RNA duplex energy prediction, assessing the impact of microRNA binding on complete mRNA molecules. It uses the RNAlib library from the Vienna RNA package.

::DEVELOPER

Tammi Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MicroTar Serial versionParallel (MPI) version

:: MORE INFORMATION

Citation:

Thadani R, Tammi MT (2006).
MicroTar: predicting microRNA targets from RNA duplexes
BMC Bioinformatics 7:S20.

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