PhyloCore – Phylogenetic approach to Identifying Core Taxa in Microbial Communities

PhyloCore

:: DESCRIPTION

PhyloCore is an application that uses a phylogeny-based algorithm to identify the core microbiota taxa at the proper taxonomic levels.

::DEVELOPER

Wu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

PhyloCore

:: MORE INFORMATION

Citation

Ren T, Wu M.
PhyloCore: A phylogenetic approach to identifying core taxa in microbial communities.
Gene. 2016 Nov 30;593(2):330-3. doi: 10.1016/j.gene.2016.08.032. Epub 2016 Aug 24. PMID: 27567683; PMCID: PMC5037057.

PanFP – Pangenome-based Functional Profiles for Microbial Communities

PanFP

:: DESCRIPTION

The software called PanFP (Pangenome-based functional profile) is a tool to predict functional composition of microbial communities based on communities survey data which builds a pangenome for each OTU and assigns the pangenome’s functional profile to the OTU.

::DEVELOPER

Se-Ran Jun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Perl

:: DOWNLOAD

 PanFP

:: MORE INFORMATION

Citation

PanFP: pangenome-based functional profiles for microbial communities.
Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA.
BMC Res Notes. 2015 Sep 26;8(1):479.

MetaBAT 2.12.1 – Reconstructing Single Genomes from Complex Microbial Communities

MetaBAT 2.12.1

:: DESCRIPTION

MetaBAT is an efficient tool for accurately reconstructing single genomes from complex microbial communities.

::DEVELOPER

Zhong Wang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  MacOsX
  • C++ Compiler

:: DOWNLOAD

 MetaBAT

:: MORE INFORMATION

Citation

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
Kang DD, Froula J, Egan R, Wang Z.
PeerJ. 2015 Aug 27;3:e1165. doi: 10.7717/peerj.1165.