growthpred 1.07
:: DESCRIPTION
growthpred predicts the minimum generation time for a bacterial or archaeal organism based on its codon usage bias intensity (CUB). The CUB index is calculated given two input sets of sequences: 1) highly expressed genes 2) other genes. The application runs 1000 bootstraps and outputs the average and the standard deviation of the predictions.
::DEVELOPER
Microbial evolutionary genomics , Institut Pasteur
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- LinuxMatlab
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Vieira-Silva S, Rocha EPC, 2010
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics.
PLoS Genet 6(1): e1000808. doi:10.1371/journal.pgen.1000808
