artefactCorrection 1.1 – Detection and Correction of Probe-level Artefacts on microarrays

artefactCorrection 1.1

:: DESCRIPTION

artefactCorrection is a simple approach to detect artefacts with high recall and precision which we further improve by taking into account the spatial layout of arrays.

::DEVELOPER

Institut für Informatik, Ludwig-Maximilians-Universität München

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R package

:: DOWNLOAD

 artefactCorrection

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 May 30;13:114. doi: 10.1186/1471-2105-13-114.
Detection and correction of probe-level artefacts on microarrays.
Petri T, Berchtold E, Zimmer R, Friedel CC.

snm 1.38.0 – Supervised Normalization of Microarrays

snm 1.38.0

:: DESCRIPTION

SNM is a modeling strategy especially designed for normalizing high-throughput genomic data.

::DEVELOPER

STOREY LAB | Princeton University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 SNM

:: MORE INFORMATION

Citation

Bioinformatics. 2010 May 15;26(10):1308-15. doi: 10.1093/bioinformatics/btq118. Epub 2010 Mar 31.
Supervised normalization of microarrays.
Mecham BH1, Nelson PS, Storey JD.