ZODET 1.0.9 – Identification, Analysis and Visualisation of Outlier Genes in Microarray Expression Data

ZODET 1.0.9

:: DESCRIPTION

ZODET (z-score outlier detection ) is a graphical software package  that enables identification and visualisation of gross abnormalities in gene expression (outliers) in individuals, using whole genome microarray data.

::DEVELOPER

Centre for Molecular Medicine, University College London

:: SCREENSHOTS

ZODET

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • JRE

:: DOWNLOAD

 ZODET

:: MORE INFORMATION

Citation

ZODET: software for the identification, analysis and visualisation of outlier genes in microarray expression data.
Roden DL, Sewell GW, Lobley A, Levine AP, Smith AM, Segal AW.
PLoS One. 2014 Jan 8;9(1):e81123. doi: 10.1371/journal.pone.0081123

ModuleMaster 1.1 – Identify Cis-regulatory Modules using Promoter Analysis and Microarray Expression data Regression

ModuleMaster 1.1

:: DESCRIPTION

ModuleMaster is a novel application for finding cis-regulatory modules (CRMs) in sets of co-expressed genes. The application comes with a newly developed method which not only considers transcription factor binding information but also multivariate functional relationships between regulators and target genes to improve the detection of CRMs. Given only the results of a microarray and a subsequent clustering experiment, the program includes all necessary data and algorithms to perform every step to find CRMs.

::DEVELOPER

the Center for Bioinformatics Tübingen (Zentrum für Bioinformatik Tübingen, ZBIT).

:: SCREENSHOTS

ModuleMaster

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • Java

:: DOWNLOAD

  ModuleMaster

:: MORE INFORMATION

Citation

Biosystems. 2010 Jan;99(1):79-81. doi: 10.1016/j.biosystems.2009.09.005. Epub 2009 Oct 9.
ModuleMaster: a new tool to decipher transcriptional regulatory networks.
Wrzodek C, Schröder A, Dräger A, Wanke D, Berendzen KW, Kronfeld M, Harter K, Zell A.