:: DESCRIPTION
miRA is a new tool to identify miRNA precursors in plants, allowing for heterogeneous and complex precursor populations.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.
Evers M, Huttner M, Dueck A, Meister G, Engelmann JC.
BMC Bioinformatics. 2015 Nov 5;16:370. doi: 10.1186/s12859-015-0798-3.
:: DESCRIPTION
The UEA sRNA workbench is a new simple to use, downloadable sRNA software package based on algorithms developed for the original UEA sRNA Toolkit that will perform a complete analysis of single or multiple-sample sRNA datasets from both plants and animals to identify interesting landmarks (such as detection of novel micro RNA sequences) or other tasks such as profiling small RNA expression patterns in genetic data.
::DEVELOPER
the RNA Computational Biology group at the University of East Anglia (UEA)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Stocks, M. B.; Moxon, S.; Mapleson, D.; Woolfenden, H. C.; Mohorianu, I.; Folkes, L.; Schwach, F.; Dalmay, T. & Moulton, V. (2012)
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.
Bioinformatics ,Vol. 28,pp. 2059-2061
RNA Biol. 2013 Jul;10(7):1221-30. doi: 10.4161/rna.25538. Epub 2013 Jun 28.
CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data.
Mohorianu I1, Stocks MB, Wood J, Dalmay T, Moulton V.
