Tag: Metrics

RNA-SeQC 1.1.8 – Quality Control Metrics for RNA-seq data

RNA-SeQC 1.1.8

:: DESCRIPTION

RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data

::DEVELOPER

The Cancer Genome Analysis (CGA) group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java 

:: DOWNLOAD

 RNA-SeQC

:: MORE INFORMATION

Citation

Deluca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G. (2012)
RNA-SeQC: RNA-seq metrics for quality control and process optimization.
Bioinformatics (2012) 28 (11): 1530-1532.

Illuminate 0.6.5 – Analytics toolkit in Python for Illumina HiSeq and MiSeq metrics

Illuminate 0.6.5

:: DESCRIPTION

Illuminate parses the metrics binaries that result from Illumina sequencer runs, and provides usable data in the form of python dictionaries and dataframes. Intended to emulate the output of Illumina SAV, illuminate allows you to print sequencing run metrics to the command line as well as work with the data programmatically.

::DEVELOPER

Naomi Most

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • Python

:: DOWNLOAD

 Illuminate

:: MORE INFORMATION