Batman – Bayesian Tool for Methylation Analysis

Batman

:: DESCRIPTION

Batman is a new tool for analysing DNA methylation data from MeDIP experiments combined with microarray or high-throughput sequencing assays.

::DEVELOPER

Thomas Down

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Batman

:: MORE INFORMATION

Citation:

Thomas A Down et al.
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
Nature Biotechnology 26, 779 – 785 (2008)

methylKit 0.99.2 – R package for DNA methylation analysis

methylKit 0.99.2

:: DESCRIPTION

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. It can potentially handle whole-genome bisulfite sequencing data if proper input format is provided.

::DEVELOPER

BIMSB bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 methylKit

:: MORE INFORMATION

Citaton

Genome Biol. 2012 Oct 3;13(10):R87. [Epub ahead of print]
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles.
Akalin A, Kormaksson M, Li S, Garrett-Bakelman FE, Figueroa ME, Melnick A, Mason CE.

QUMA 1.1.13 – Visualize and Quantify Bisulfite Sequence data for CpG Methylation Analysis

QUMA 1.1.13

:: DESCRIPTION

QUMA (QUantification tool for Methylation Analysis)is a web-based tool for CpG methylation analysis.Youcan easily align, visualize and quantify bisulfite sequence data for CpG methylation analysis

::DEVELOPER

Laboratory for Mammalian Epigenetic StudiesCenter for Developmental BiologyRIKEN

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 QUMA

:: MORE INFORMATION

Citation

Yuichi Kumaki, Masaaki Oda & Masaki Okano
QUMA: quantification tool for methylation analysis
Nucleic Acids Res. 36, W170-W175 (2008).