:: DESCRIPTION
Clark is a novel approach to classify metagenomic reads at the species or genus level with high accuracy and high speed.
::DEVELOPER
Algorithms and Computational Biology Lab ,University of California
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Ounit R, Wanamaker S, Close TJ, Lonardi S,
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
BMC Genomics 2015, 16:236.
:: DESCRIPTION
MP3 is a standalone tool and web server for the prediction of pathogenic proteins in both genomic and metagenomic datasets.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
MP3: a software tool for the prediction of pathogenic proteins in genomic and metagenomic data.
Gupta A, Kapil R, Dhakan DB, Sharma VK.
PLoS One. 2014 Apr 15;9(4):e93907. doi: 10.1371/journal.pone.0093907.
:: DESCRIPTION
MGKit library is to provide a series of useful modules and packages to make it easier to build custom pipelines for metagenomics or any kind of bioinformatics analysis.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Rubino, F. and Creevey, C.J. 2014.
MGkit: Metagenomic Framework For The Study Of Microbial Communities.
figshare [doi:10.6084/m9.figshare.1269288].`
:: DESCRIPTION
MBBC is a useful tool in metagenomic studies. It is a novel composition-based approach to bin environmental shotgun reads, by considering the k-mer frequency in reads and the inferred Markovian property of the unknown species or OTUs (operational taxonomic units).
::DEVELOPER
Hu Lab – Data Integration and Knowledge Discovery @ UCF
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMC Bioinformatics. 2015 Feb 5;16(1):36. [Epub ahead of print]
MBBC: an efficient approach for metagenomic binning based on clustering.
Wang Y, Hu H, Li X.
:: DESCRIPTION
MUSiCC is a software package for normalizing and correcting gene abundance measurements derived from metagenomic shotgun sequencing
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
MUSiCC: a marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome.
Manor O, Borenstein E.
Genome Biol. 2015 Mar 25;16:53. doi: 10.1186/s13059-015-0610-8.
:: DESCRIPTION
MGAviewer is a graphic interface for visualization of alignment results between metagenomic samples and reference microbial genomes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
LikelyBin is an unsupervised metagenomic binner.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff and Joshua S. Weitz. Unsupervised Statistical Clustering of Environmental Shotgun Sequences. BMC Bioinformatics 2009, 10:316.
