Tag: Metabolome

PhenoMeter 1.0 – Metabolome Database Search Tool

PhenoMeter 1.0

:: DESCRIPTION

The PhenoMeter is a metabolome database search tool that uses metabolite response patterns or metabolic phenotypes as queries, searching the MetabolomeExpress metabolomics database for significantly similar phenotypes and ranking them by similarity.

::DEVELOPER

PhenoMeter team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links.
Carroll AJ, Zhang P, Whitehead L, Kaines S, Tcherkez G, Badger MR.
Front Bioeng Biotechnol. 2015 Jul 29;3:106. doi: 10.3389/fbioe.2015.00106.

MetaQuant 1.3.5 – Quantification of GC/MS based Metabolome data

MetaQuant 1.3.5

:: DESCRIPTION

MetaQuant is a Java based program for the automatic and accurate quantification of GC/MS based metabolome data. In contrast to other programs MetaQuant is able to quantify hundreds of substances simultaneously without manual intervention. The integration of a self-acting calibration function allows the parallel and fast calibration for several metabolites. Finally, MetaQuant is able to import GC/MS data in the common NetCDF format and to export the results of the quantification into Microsoft Excel format.

::DEVELOPER

Boyke Bunk, Martin Kucklick and Karsten Hiller, Institute for Microbiology Technical University of Braunschweig Spielmannstr

:: SCREENSHOTS

MetaQuant

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java

:: DOWNLOAD

 MetaQuant

:: MORE INFORMATION

Citation

MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data.
Bunk B, Kucklick M, Jonas R, Münch R, Schobert M, Jahn D, Hiller K.
Bioinformatics. 2006 Dec 1;22(23):2962-5. Epub 2006 Oct 17.