:: DESCRIPTION
XenoSite Web provides prediction web services for small molecule biochemistry. XenoSite Web can be used by medicinal chemists and biologists to make predictions about the human in vivo metabolism of small molecules.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
XenoSite-Server: A Web-Available Site of Metabolism Prediction Tool.
Matlock MK, Hughes TB, Swamidass SJ.
Bioinformatics. 2014 Nov 18. pii: btu761.
:: DESCRIPTION
The BioMet ToolBox is a web-based resource for exploiting the capabilites of metabolic networks described in genome scale models using flux analysis and random sampling, powered by RAVEN, gene set analysis and basic microarray analysis using PIANO, thereby providing an integrated analysis to identify coregulated subnetwork structures within the metabolic network and also for identifying statistically significant gene sets enabling biological interpretation.
:: DEVELOPER
Systems & Synthetic Biology – SYSBIO, Chalmers University of Technology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.
Garcia-Albornoz M, Thankaswamy-Kosalai S, Nilsson A, V?remo L, Nookaew I, Nielsen J.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W175-81. doi: 10.1093/nar/gku371.
:: DESCRIPTION
GEMINI produces a regulatory network that is simultaneously consistent with observed gene knockout phenotypes, gene expression data, and the corresponding metabolic network.
::DEVELOPER
The Hood-Price Lab for Systems Biomedicine
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The PROM algorithm represents the successful integration of a genome scale transcriptional regulatory network with a biochemically detailed metabolic network, bridging two important classes of systems biology models that have rarely been combined quantitatively.
::DEVELOPER
The Hood-Price Lab for Systems Biomedicine
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
A guide to integrating transcriptional regulatory and metabolic networks using PROM (probabilistic regulation of metabolism).
Simeonidis E, Chandrasekaran S, Price ND.
Methods Mol Biol. 2013;985:103-12.