Tag: Metabolic Function

MetQy – Query Metabolic Functions of Genes and Genomes

MetQy

:: DESCRIPTION

MetQy (metabolic query) is a R package to ease interfacing with the Kyoto Encyclopedia of Genes and Genomes (KEGG) database to query metabolic functions of genes and genomes.

::DEVELOPER

OSS-Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOs
  • R

:: DOWNLOAD

MetQy

:: MORE INFORMATION

Citation

Bioinformatics. 2018 Dec 1;34(23):4134-4137. doi: 10.1093/bioinformatics/bty447.
MetQy-an R package to query metabolic functions of genes and genomes.
Martinez-Vernon AS, Farrell F, Soyer OS

CoMiDA v1.0.0 – Designing Minimal Microbial Communities with specified Metabolic Functions

CoMiDA v1.0.0

:: DESCRIPTION

CoMiDA is an algorithm for designing simple communities with some predefined metabolic capacities.

::DEVELOPER

the Borenstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

CoMiDA

:: MORE INFORMATION

Citation

Bioinformatics. 2016 Jul 1;32(13):2008-16. doi: 10.1093/bioinformatics/btw107.
An algorithm for designing minimal microbial communities with desired metabolic capacities.
Eng A, Borenstein E.