SLICEMBLER – Meta-assembler Designed for Ultra-deep Sequencing data

SLICEMBLER

:: DESCRIPTION

SLICEMBLER is a meta-assembler designed for ultra-deep sequencing data

:: DEVELOPER

the algorithm and computational biology lab, university of California

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / windows/ MacOsX
  • Python

:: DOWNLOAD

 SLICEMBLER

:: MORE INFORMATION

Citation

De novo meta-assembly of ultra-deep sequencing data.
Mirebrahim H, Close TJ, Lonardi S.
Bioinformatics. 2015 Jun 15;31(12):i9-i16. doi: 10.1093/bioinformatics/btv226.

META 1.7 – Carryout Meta-analysis of Genetic Studies

META 1.7

:: DESCRIPTION

META is a program for the meta analysis of genome-wide association studies. The program is designed to synthesizing the evidence from different association studies. Particularly, the program is able to work seamlessly with the output of SNPTEST [1] . This program was used in the meta analysis of the genome-wide association studies of smoking.

::DEVELOPER

Jonathan Marchini

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 META

:: MORE INFORMATION

Citation

J. Z. Liu, et al (2010)
Meta-analysis and imputation refines the association of 15q25 with smoling quantity.
Nature Genetics, 42, 436-440
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NYoSh Analysis Workbench 2.0 – Biological data analysis based on Meta Programming System

NYoSh Analysis Workbench 2.0

:: DESCRIPTION

NYoSh (Not your ordinary Shell) Analysis Workbench is a data analysis workbench built on top of MPS. Takes advantage of composable languages to create a platform intermediate between command line flexibility and user-friendly custom interfaces.

::DEVELOPER

Campagne Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • R
  • Active MQ

:: DOWNLOAD

NYoSh Analysis Workbench

:: MORE INFORMATION

Citation

PeerJ. 2014 Jan 2;2:e241. doi: 10.7717/peerj.241. eCollection 2014.
Composable languages for bioinformatics: the NYoSh experiment.
Simi M, Campagne F.