MERLIN – Predict Regulators for individual Genes and Modules

MERLIN

:: DESCRIPTION

MERLIN (Modular regulatory network learning with per gene information) is an algorithm for learning regulatory networks that strikes a balance between per-gene and per-module methods.

::DEVELOPER

Roy Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MERLIN

:: MORE INFORMATION

Citation

Roy S, Lagree S, Hou Z, Thomson JA, Stewart R, Gasch AP.
Integrated module and gene-specific regulatory inference implicates upstream signaling networks.
PLoS Comput Biol. 2013;9(10):e1003252. doi: 10.1371/journal.pcbi.1003252. Epub 2013 Oct 17. PMID: 24146602; PMCID: PMC3798279.

MerlinViewer 20101207 – Visualising Merlin output data

MerlinViewer 20101207

:: DESCRIPTION

MerlinViewer visiualizes the results of high density SNP chip analysis using the Merlin application. The results are displayed as a scatter graph of the LOD, HLOD or Alpha score against chromosomal position

::DEVELOPER

Ian’s DNA@Leeds

:: SCREENSHOTS

MerlinViewer

:: REQUIREMENTS

  • Windows
  • Microsoft .NET framework version 2.0

:: DOWNLOAD

 MerlinViewer

:: MORE INFORMATION

MERLIN 1.1.2 – Pedigree Analysis

MERLIN 1.1.2

:: DESCRIPTION

MERLIN (multipoint engine for rapid likelihood inference ) uses sparse trees to represent gene flow in pedigrees and is one of the fastest pedigree analysis packages around. it performs rapid haplotyping, genotype error detection and affected pair linkage analyses and can handle more markers than other pedigree analysis packages.

::DEVELOPER

Abecasis Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

MERLIN

:: MORE INFORMATION

Citation:

Abecasis GR, Cherny SS, Cookson WO and Cardon LR
Merlin-rapid analysis of dense genetic maps using sparse gene flow trees.
Nat Genet (2002) 30:97-101

If you decide to useMERLIN, please take a minute to register.