:: DESCRIPTION
MeDuSa (Multi-Draft based Scaffolder) is a draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
::DEVELOPER
Florence Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2015 Mar 25. pii: btv171.
MeDuSa: a multi-draft based scaffolder.
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M
:: DESCRIPTION
MEDUSA is a tool for automatic selection and visual assessment of PCR primer pairs, developed to assist large scale gene expression analysis projects.
:: DEVELOPER
Sonnhammer Bioinformatics Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
Citation
Bioinformatics. 2001 Jul;17(7):656-7.
MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs.
Podowski RM, Sonnhammer EL.
:: DESCRIPTION
MEDUSA (Motif Element Detection Using Sequence Agglomeration) is an integrative method for learning motif models of transcription factor binding sites by incorporating promoter sequence and gene expression data. We use a modern large-margin machine learning approach, based on boosting, to enable feature selection from the high-dimensional search space of candidate binding sequences while avoiding overfitting.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Learning regulatory programs that accurately predict differential expression with MEDUSA.
Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.
Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.
:: DESCRIPTION
Medusa is a java standalone application for visualization and clustering analysis of biological networks in 2D. It is highly interactive and it supports weighted and multi-edged graphs where each edge between two bioentities can represent a different biological concept. Comparing to previous versions, it is currently enriched with a variety of layout and clustering methods for more intuitive visualizations. It is easy to integrate with web application since it is offered as an applet.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Medusa: a simple tool for interaction graph analysis.
Hooper SD, Bork P
Bioinformatics. 2005 Dec 15; 21(24): 4432-3. Epub 2005 Sep 27; PubMed: 16188923.
