miRLocator – Machine Learning-based mature miRNAs within pre-miRNA Sequences

miRLocator

:: DESCRIPTION

miRLocator applies machine learning algorithms to accurately predict the localization of most likely miRNAs within their pre-miRNAs.

::DEVELOPER

Ma Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

miRLocator

:: MORE INFORMATION

Citation

Zhang T, Ju L, Zhai J, Song Y, Song J, Ma C.
miRLocator: A Python Implementation and Web Server for Predicting miRNAs from Pre-miRNA Sequences.
Methods Mol Biol. 2019;1932:89-97. doi: 10.1007/978-1-4939-9042-9_6. PMID: 30701493.

Cui H, Zhai J, Ma C.
miRLocator: Machine Learning-Based Prediction of Mature MicroRNAs within Plant Pre-miRNA Sequences.
PLoS One. 2015 Nov 11;10(11):e0142753. doi: 10.1371/journal.pone.0142753. PMID: 26558614; PMCID: PMC4641693.

MatureBayes – Web-based tool for the Computational Identification of Mature miRNAs

MatureBayes

:: DESCRIPTION

MatureBayes is a tool for finding mature miRNA within a miRNA precursor sequence using a Naive Bays classifier.

::DEVELOPER

Computational Biology Lab, IMBB/FORTH

: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 MatureBayes

:: MORE INFORMATION

Citation

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.
Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.
PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843.

MiRmat – Predict mature microRNA from pri-microRNA

MiRmat

:: DESCRIPTION

MiRmat is a software designed to predict mature microRNA from pri-microRNA. This tool can be divided into two parts, one is for predicting Drosha processing site, which is based on energy distribution pattern along primary microRNA’s secondary structure; the other is for predicting Dicer processing site, which is based on precursor microRNA’s structure feature

::DEVELOPER

Bioinformatics Group in Nanjing University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl
  • RNAfold
  • Matlab

:: DOWNLOAD

   MiRmat

:: MORE INFORMATION

Citation

PLoS One. 2012;7(12):e51673. doi: 10.1371/journal.pone.0051673. Epub 2012 Dec 27.
MiRmat: mature microRNA sequence prediction.
He C, Li YX, Zhang G, Gu Z, Yang R, Li J, Lu ZJ, Zhou ZH, Zhang C, Wang J.

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