IMMpractical 1.2 – Markov Chain Models for Analysis of DNA Sequences

IMMpractical 1.2

:: DESCRIPTION

IMMpractical implements various Markov chain model-based methods for analysis of DNA sequences.Markov chain models are commonly used for content-based appraisal of coding potential in genomic DNA.

::DEVELOPER

The Brendel Group @ Indiana University

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

IMMpractical

:: MORE INFORMATION

Citation

Sparks, M.E., Brendel, V. and Dorman, K.S. (2007)
Markov model variants for appraisal of coding potential in plant DNA.
LNBI. 4463:394-405.

markophylo 1.0.7 – Markov Chain Models for Phylogenetic Trees

markophylo 1.0.7

:: DESCRIPTION

markophylo allows for fitting of maximum likelihood models using Markov chains on phylogenetic trees for analysis of discrete character data.

::DEVELOPER

Utkarsh J. Dang <udang at mcmaster.ca>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R

:: DOWNLOAD

 markophylo

:: MORE INFORMATION

Citation

markophylo: Markov Chain Analysis on Phylogenetic Trees.
Dang UJ, Golding GB.
Bioinformatics. 2015 Sep 11. pii: btv541.