MATAM 1.6.0 – Mapping-Assisted Targeted-Assembly for Metagenomics

MATAM 1.6.0

:: DESCRIPTION

MATAM is a software dedicated to the fast and accurate targeted assembly of short reads sequenced from a genomic marker of interest. It has been applied to the assembly of 16S rRNA markers and is validated on simulated, synthetic and genuine metagenomes.

::DEVELOPER

Bonsai Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MATAM

:: MORE INFORMATION

Citation:

Pericard P, Dufresne Y, Couderc L, Blanquart S, Touzet H.
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.
Bioinformatics. 2018 Feb 15;34(4):585-591. doi: 10.1093/bioinformatics/btx644. PMID: 29040406.