:: DESCRIPTION
GenMap computes the uniqueness of k-mers for each position in the genome while allowing for up to e mismatches.
::DEVELOPER
:: SCREENSHOTS
n/a
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pockrandt C, Alzamel M, Iliopoulos CS, Reinert K.
GenMap: ultra-fast computation of genome mappability.
Bioinformatics. 2020 Jun 1;36(12):3687-3692. doi: 10.1093/bioinformatics/btaa222. PMID: 32246826; PMCID: PMC7320602.
:: DESCRIPTION
MaSC is a Perl implementation of our MaSC approach to estimating fragment length from short-read high-throughput sequencing data
::DEVELOPER
Perkins Lab at the OHRI
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
“MaSC: Mappability-Sensitive Cross-Correlation to Estimate Fragment Length for Short Read Sequencing Data“,
Ramachandran P, Palidwor GA, Porter CJ, Perkins TJ.
Bioinformatics. 2013 Feb 15;29(4):444-50. doi: 10.1093/bioinformatics/btt001. Epub 2013 Jan 7.
:: DESCRIPTION
The GMA suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variations
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Aug 15;28(16):2097-105. doi: 10.1093/bioinformatics/bts330. Epub 2012 Jun 4.
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.
Lee H1, Schatz MC.
