easym6A v1.0.0 – A pipeline for m6A Sequencing data pre-processing

easym6A v1.0.0

:: DESCRIPTION

easym6A creates a bash script to process m6A/MeRIP-seq data from adapter trimming to peak calling. It can also serve as a pipeline for RNA-seq data.

::DEVELOPER

Chen Group at U Chicago

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX

:: DOWNLOAD

easym6A

:: MORE INFORMATION

Citation

Liu S, Zhu A, He C, Chen M.
REPIC: a database for exploring the N6-methyladenosine methylome.
Genome Biol. 2020 Apr 28;21(1):100. doi: 10.1186/s13059-020-02012-4. PMID: 32345346; PMCID: PMC7187508.

RADAR v0.2.4 – Differential Methylation analysis for m6A Sequence data

RADAR v0.2.4

:: DESCRIPTION

RADAR is a comprehensive analytical tool for detecting differentially methylated loci in MeRIP-seq data.

::DEVELOPER

Chen Group at U Chicago

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX

:: DOWNLOAD

RADAR

:: MORE INFORMATION

Citation

Zhang Z, Zhan Q, Eckert M, Zhu A, Chryplewicz A, De Jesus DF, Ren D, Kulkarni RN, Lengyel E, He C, Chen M.
RADAR: differential analysis of MeRIP-seq data with a random effect model.
Genome Biol. 2019 Dec 23;20(1):294. doi: 10.1186/s13059-019-1915-9. PMID: 31870409; PMCID: PMC6927177.