LTR_STRUC – LTR Retrotransposon Structure program

LTR_STRUC

:: DESCRIPTION

LTR_STRUC is a new data-mining program that scans nucleotide sequence files for LTR retrotransposons and analyzes any resulting hits. Input files can be in fasta or NCBI flat file format.

::DEVELOPER

McDonald Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Contact with Vinay Mittal ( vinaykmittal@gatech.edu )

:: MORE INFORMATION

Citation:

McCarthy, E.M., and J.F. McDonald. 2003.
LTR_STRUC: A novel search and identification program for LTR retrotransposons.
Bioinformatics 19: 362-367

LTRsift 1.0.2 – Postprocessing of de novo predicted LTR Retrotransposon Annotations

LTRsift 1.0.2

:: DESCRIPTION

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest.

::DEVELOPER

RESEARCH GROUP FOR GENOME INFORMATICS ,Center for Bioinformatics, University of Hamburg

:: SCREENSHOTS

:: REQUIREMENTS

Linux / MacOsX

:: DOWNLOAD

LTRsift

:: MORE INFORMATION

Citation:

S. Steinbiss, S. Kastens and S. Kurtz:
LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons.
Mobile DNA, 3:18 (2012)