LSA
:: DESCRIPTION
LSA (Latent Strain Analysis) partitions reads into sets likely belonging to the same genome, using the covariance of k-mers across many samples.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Cleary B, Brito IL, Huang K, Gevers D, Shea T, Young S, Alm EJ.
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.
Nat Biotechnol. 2015 Oct;33(10):1053-60. doi: 10.1038/nbt.3329. Epub 2015 Sep 14. PMID: 26368049; PMCID: PMC4720164.