MetaCRAM
:: DESCRIPTION
MetaCRAM is a pipeline for taxonomy identification and lossless compression of FASTA-format metagenomic reads. It integrates algorithms for taxonomy identification, read alignment, assembly, and finally, a reference-based compression method in a parallel manner.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux/MacOsX
- Perl
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression.
Kim M, Zhang X, Ligo JG, Farnoud F, Veeravalli VV, Milenkovic O.
BMC Bioinformatics. 2016 Feb 19;17(1):94. doi: 10.1186/s12859-016-0932-x
