:: DESCRIPTION
LcaMap is a software for simultaneous identification of duplication, losses and lateral gene transfers. LcaMap takes a gene tree G, a species tree S, and the costs of a lateral gene transfer, a gene duplication, and a gene loss as its input. It outputs all minimum-cost LCA-reconciliations between G and S.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
DLCoal is a software package containing the DLCoalRecon program as well as several other useful utilities for working with gene trees.
DLCoalRecon is a reconciliation method for inferring gene duplications, losses, and coalescence (incomplete lineage sorting).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Unified modeling of gene duplication, loss, and coalescence using a locus tree
Matthew D. Rasmussen and Manolis Kellis.
Genome Res. 2012 Apr;22(4):755-65.
:: DESCRIPTION
Phyldog is a program made to simultaneously build gene and species trees when gene families have undergone duplications and losses.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112.
Genome-scale coestimation of species and gene trees.
Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.
