ArchPred – Knwoledge-based Loop Structure Prediction method

ArchPred

:: DESCRIPTION

ARCH_Pred is a web application that interface a knowledge-based loop structure prediction method. Given a query loop of unknown structure, ARCH_Pred identifies the most suitable loops from a library of structures of protein loops.

::DEVELOPER

Bioinformatics Lab :: IBERS :: Aberystwyth University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

ArchPRED: a template based loop structure prediction server.
Fernandez-Fuentes N, Zhai J, Fiser A.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W173-6.

FREAD 3.0.1 – Database Search Loop Structure Prediction protocol

FREAD 3.0.1

:: DESCRIPTION

FREAD is a database search loop structure prediction protocol. Loops are generally located in the protein’s surface and they are known to be notoriously difficult to predict.The basic assumption of FREAD is that local sequence similarity may determine the backbone structure of a local protein structure if it is constrained within anchor structures.

::DEVELOPER

Oxford Protein Informatics Group (OPIG)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

FREAD

Citation

FREAD revisited: Accurate loop structure prediction using a database search algorithm.
Choi Y, Deane CM.
Proteins. 2010 May 1;78(6):1431-40. doi: 10.1002/prot.22658.