TitanCNA v1.17.1 – Analysis of subClonal CNA and LOH in Cancer

TitanCNA v1.17.1

:: DESCRIPTION

TitanCNA is a R/Bioconductor package for analyzing subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in whole genome and exome sequencing of tumours.

::DEVELOPER

The Ha Lab @FredHutch

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX / Windows
R

:: DOWNLOAD

:: MORE INFORMATION

Citation

Ha, G., et al. (2014).
TITAN: Inference of copy number architectures in clonal cell populations from tumour whole genome sequence data.
Genome Research, 24: 1881-1893. (PMID: 25060187)

CNViewer 20111128 – Identification of Duplications, Insertions or LOH that Segregates with a Disease Phenotype

CNViewer 20111128

:: DESCRIPTION

CNViewer aids the identification of regions of abnormal copy number variation that segregates with a disease phenotype in small pedigree.

::DEVELOPER

Ian’s DNA@Leeds

:: SCREENSHOTS

:: REQUIREMENTS

Windows
Microsoft .NET framework version 2.0

:: DOWNLOAD

:: MORE INFORMATION

Citation

PLoS One. 2012;7(8):e43466. doi: 10.1371/journal.pone.0043466. Epub 2012 Aug 17.
Rapid visualisation of microarray copy number data for the detection of structural variations linked to a disease phenotype.
Carr IM, Diggle CP, Khan K, Inglehearn C, McKibbin M, Bonthron DT, Markham AF, Anwar R, Dobbie A, Pena SD, Ali M.

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