:: DESCRIPTION
CodonLogo is a tool for visualization of conserved codon patterns in multiple sequence alignments.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2012 Jul 15;28(14):1935-6. doi: 10.1093/bioinformatics/bts295. Epub 2012 May 17.
CodonLogo: a sequence logo-based viewer for codon patterns.
Sharma V1, Murphy DP, Provan G, Baranov PV.
:: DESCRIPTION
Seq2Logo is a web-based sequence logo generation method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion.
Thomsen MC, Nielsen M.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W281-7. doi: 10.1093/nar/gks469.
:: DESCRIPTION
the pLogo is a motif visualization software in which residue heights are scaled relative to their statistical significance.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nat Methods. 2013 Dec;10(12):1211-2. doi: 10.1038/nmeth.2646.
pLogo: a probabilistic approach to visualizing sequence motifs.
O’Shea JP, Chou MF, Quader SA, Ryan JK, Church GM, Schwartz D.
:: DESCRIPTION
LogoBar is a Java application to display protein sequence logos. With this application you can generate protein sequence logos from multiple sequence alignments on your own computer, and you will get an additional output file that shows the amino acid incidence at every position of the multiple sequence alignment.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
LogoBar: bar graph visualization of protein logos with gaps
Åsa Pérez-Bercoff, Johan Koch and Thomas R. Bürglin
Bioinformatics (2006) 22 (1): 112-114.
:: DESCRIPTION
FACIL infers the genetic code directly from any set of nucleic acid sequences and assigns a Random Forest-based reliability score to its predictions. To run FACIL, start by entering a genome sequence or a set of sequence fragments derived from the same genome into the search box below. It is important that the sequences are derived from the same genome to prevent mixing signals from potentially conflicting genetic codes. For example, a eukaryotic cell may contain up to three different translation codes: nuclear, mitochondrial and plastid.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BE Dutilh et al. (2011),
“FACIL: fast and accurate genetic code inference and logo“,
Bioinformatics 27: 1929.
