LocHap 2.0
:: DESCRIPTION
LocHap is an ultra-fast computational pipeline for calling local haplotype variant using deep DNA-sequencing data to reveal cellular heterogeneity and somatic mosaicism.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / MacOsX
- C++ Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sengupta S, Gulukota K, Zhu Y, Ober C, Naughton K, Wentworth-Sheilds W, Ji Y.
Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples.
Nucleic Acids Res. 2016 Feb 18;44(3):e25. doi: 10.1093/nar/gkv953. Epub 2015 Sep 29. PMID: 26420835; PMCID: PMC4756850.