MUMMALS 1.01 – MUltiple alignment with Multiple MAtch state models of Local Structure

MUMMALS 1.01

:: DESCRIPTION

MUMMALS constructs a multiple sequence alignment given a set of protein sequences.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 MUMMALS

:: MORE INFORMATION

Citation:

J. Pei and N.V.Grishin (2006)
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information“.
Nucleic Acids Res 34(16): 4364-4374

I-sites 2 – Predict the Local Structure of a Protein

I-sites 2

:: DESCRIPTION

I-sites is a method for predicting initiation sites of folding protein sequences.

::DEVELOPER

Chris Bystroff

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

I-sites

:: MORE INFORMATION

Citaiton

Bystroff C & Baker D. (1998).
Prediction of local structure in proteins using a library of sequence-structure motifs.
J Mol Biol 281, 565-77.