Tag: List

MGEnrichment – Microglia Gene List Enrichment Calculator

MGEnrichment

:: DESCRIPTION

MGEnrichment is a web application developed both to disseminate to the community our curated database of microglia-relevant gene lists, and to allow non-programming scientists to easily conduct statistical enrichment analysis on their gene expression data.

::DEVELOPER

Ciernia Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web server

:: DOWNLOAD

MGEnrichment

:: MORE INFORMATION

Citation

Jao J, Ciernia AV.
MGEnrichment: A web application for microglia gene list enrichment analysis.
PLoS Comput Biol. 2021 Nov 17;17(11):e1009160. doi: 10.1371/journal.pcbi.1009160. PMID: 34788279; PMCID: PMC8598070.

MassSpec 1.1 – Peak list Extraction from Proteomic Mass Spectra

MassSpec 1.1

:: DESCRIPTION

MassSpecis a MATLAB implementation of the peak list extraction procedure

::DEVELOPER

laboratorio di Bioinformatica e Biologia Sintetica – Univ. of Pavia

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Matlab

:: DOWNLOAD

 MassSpec

:: MORE INFORMATION

Citation

BMC Bioinformatics 2010, 11:518 doi:10.1186/1471-2105-11-518
Accurate peak list extraction from proteomic mass spectra for identification and profiling studies.
Barbarini N, Magni P.

LIST – Local Identity and Shared Taxa

LIST

:: DESCRIPTION

LIST-S2 predicts the deleteriousness of variants in protein sequences based on Local Identity and Shared Taxa.

::DEVELOPER

Gsponer Lab

:: SCREENSHOTS

N/a

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LIST

:: MORE INFORMATION

Citation

Malhis N, Jacobson M, Jones SJM, Gsponer J.
LIST-S2: taxonomy based sorting of deleterious missense mutations across species.
Nucleic Acids Res. 2020 Jul 2;48(W1):W154-W161. doi: 10.1093/nar/gkaa288. PMID: 32352516; PMCID: PMC7319545.

BndLst 1.6 – List Covalent & H-bonded Neighboring Atoms

BndLst 1.6

:: DESCRIPTION

Bndlst reads a PDB format file and for each atom prints a list of covalent and H-bonded neighboring atoms, along with several atomic properties. It is useful in building scripts which process atomic structures.

::DEVELOPER

Richardson Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Linux/ MacOsX/SGI-irix/Sun-SPARC

:: DOWNLOAD

BndLst

:: MORE INFORMATION

BndLst is free software available under the terms of its own BSD-style license.